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1. 10x Lacrimal Gland scRNA seq data matrix

2017. Yu, Shengyang, Tward, Aaron, and Knox, Sarah. Isolated Lacrimal gland for Single Cell RNA sequence data from E16 and P4 mice. These are the raw read count matrices along side the ... UC San Francisco.

2. A Systems Biology approach to determine cell-specific gene regulatory effects of genetic associations in multiple sclerosis

2019. Madireddy, Lohith, Kim, Kicheol, and Baranzini, Sergio. We have conducted a cell-specific pathway analysis of the latest GWAS in multiple sclerosis (MS); which analyzed a total of 47,351 cases ... UC San Francisco.

3. Aberrant oligodendroglial-vascular interactions disrupt the Blood Brain Barrier triggering CNS inflammation

2019. Niu, Jianqin, Kim, Kicheol, Fancy, Stephen, and Baranzini, Sergio. Disruption of the blood brain barrier (BBB) is critical to initiation and perpetuation of disease in Multiple Sclerosis (MS). We report h... UC San Francisco.

4. Aberrant oligodendroglial-vascular interactions disrupt the Blood Brain Barrier triggering CNS inflammation (P9-APCfloxed)(3 of 3)

2019. Niu, Jianqin, Kim, Kicheol, Fancy, Stephen, and Baranzini, Sergio. Disruption of the blood brain barrier (BBB) is critical to initiation and perpetuation of disease in Multiple Sclerosis (MS). We report h... UC San Francisco.

5. Aberrant oligodendroglial-vascular interactions disrupt the Blood Brain Barrier triggering CNS inflammation (P9-olig2cre:APCfloxed)(2 of 3)

2019. Niu, Jianqin, Kim, Kicheol, Fancy, Stephen, and Baranzini, Sergio. Disruption of the blood brain barrier (BBB) is critical to initiation and perpetuation of disease in Multiple Sclerosis (MS). We report h... UC San Francisco.

6. AlleleAnalyzer supporting data

2019. Keough, Kathleen, Lyalina, Svetlana, Olvera, Michael, Whalen, Sean, Conklin, Bruce, and Pollard, Katherine. The CRISPR/Cas system is a highly specific genome editing tool capable of distinguishing alleles differing by even a single base ... UC San Francisco.

7. Alpha-1A Adrenergic Receptor in Rabbit Heart

2016. Simpson, Paul C. The alpha-1A-adrenergic receptor (AR) subtype is associated with cardioprotective signaling in the mouse and human heart. The rabbit is ... UC San Francisco.

8. Associations between vascular risk factors, carotid atherosclerosis and cortical volume and thickness in older adults

2012. Cardenas, Valerie, Reed, Bruce, Chao, Linda, Chui, Helena, Sanossian, Nerses, DeCarli, Charles, Mack, Wendy, Kramer, Joel, Hodis, Howard, Yan, Mingzhu, Buonocore, Michael, Carmichael, Owen, Jagust, William J., and Weiner, Michael W. Data from healthy and cognitively impaired elderly, enriched for cerebrovascular disease. Background and Purpose: To investigate ... UC San Francisco.

9. C. elegans RNA Sequence for viral discovery

2014. Wang, David. Nucleic acid from two nematode species, C. elegans JU1580 (isolated from a rotting apple in Orsay, France) and C. briggsae JU1264 ... UC San Francisco.

10. Changes in brain anatomy during the course of PTSD

2012. Cardenas, Valerie, Samuelson, Kristin, Lenoci, Maryanne A., Studholme, Colin, Neylan, Thomas C., Marmar, Charles R., Schuff, Norbert, and Weiner, Michael W. Longitudinal structural T1-weighted images from middle-aged controls and veterans with PTSD (post-traumatic stress disorder). Most patien... UC San Francisco.

11. Comparison of Outcomes before and after Ohio's Law Mandating Use of the FDAApproved Protocol for Medication Abortion: A Retrospective Cohort Study

2016. Upadhyay, Ushma D., Johns, Nicole E., Combellick, Sarah L., Kohn, Julia E., Keder, Lisa M., and Roberts, Sarah C.M. Background: In February 2011, an Ohio law took effect mandating use of the United States Food and Drug Administration (FDA)-approved ... UC San Francisco.

12. CSF Biomarker and PIB-PET Derived Beta-Amyloid Signature Predicts Metabolic, Grey Matter and Cognitive Changes in Non-Demented Subjects

2012. Ewers, Michael, Insel, Philip, Jagust, William J., Shaw, Leslie, Trojanowski, John Q., Aisen, Paul, Petersen, Ronald C., Schuff, Norbert, and Weiner, Michael W. Beta-amyloid (Aß is a histopathological hallmark of Alzheimer's disease dementia, but high levels of Aß in the brain can also be found ... UC San Francisco.

13. Evaluating the Impact of a Mandatory Pre-Abortion Ultrasound Viewing Law: A Mixed Methods Study

2017. Upadhyay, Ushma, Kimport, Katrina, Belusa, Elise, Johns, Nicole, Laube, Douglas, and Roberts, Sarah. Background Since mid-2013, Wisconsin abortion providers have been legally required to display and describe pre-abortion ultrasound ... UC San Francisco.

14. Experiences of women who travel for abortion: a mixed methods systematic review

2018. Barr-Walker, Jill, Jayaweera, Ruvani, Ramirez, Ana, and Gerdts, Caitlin. Objective To systematically review the literature on women’s experiences traveling for abortion and assess how this concept has ... UC San Francisco.

15. Frontotemporal Lobar Degeneration (FTLD)

2012. Weiner, Michael W. This data set was acquired with the aim of determining the structural and chemical changes that occur in the brain as a result of ... UC San Francisco.

16. Gulf War Illness

2012. Weiner, Michael W. Some veterans who served in the Gulf War subsequently complained of a wide variety of physical and neuro-psychological symptoms, termed G... UC San Francisco.

17. Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models

2017. Baranzini, Sergio. The gut microbiota regulates T cell functions throughout the body. We hypothesized that intestinal bacteria impact the pathogenesis of ... UC San Francisco.

18. Gut Microbiota from Multiple Sclerosis patients triggers spontaneous autoimmune encephalomyelitis in mice --16S data--

2017. Wekerle, Hartmut, Berer, Kerstin, Gerdes, Lisa Ann, Cekanaviciute, Egle, Jia, Sherman, Xiao, Liang, Xia, Zhongkui, Liu, Chuan, Klotz, Luisa, Stauffer, Uta, Baranzini, Sergio, Kümpfel, Tania, Hohlfeld, Reinhard, and Krishnamoorthy, Gurumoorthy. The commensal microbiota has emerged as a key factor influencing human health and has been associated with several diseases, including ... UC San Francisco.

19. Gut Microbiota from Multiple Sclerosis patients triggers spontaneous autoimmune encephalomyelitis in mice --shotgun data--

2017. Wekerle, Hartmut, Berer, Kerstin, Gerdes, Lisa Ann, Cekanaviciute, Egle, Jia, Sherman, Xiao, Liang, Xia, Zhongkui, Liu, Chuan, Klotz, Luisa, Stauffer, Uta, Baranzini, Sergio, Kümpfel, Tania, Hohlfeld, Reinhard, and Krishnamoorthy, Gurumoorthy. There is emerging evidence that the commensal microbiota has a role in the pathogenesis of multiple sclerosis (MS), a putative autoimmune... UC San Francisco.

20. Human RAD54 inhibitor screen: summary of 158 compounds identified as 'hits'

2018. Ehmsen, Kirk, Ang, Kenny K.H., Heyer, Wolf-Dietrich, Arkin, Michelle R., Renslo, Adam R., and Davies, Julia L. This dataset, Human RAD54 inhibitor screen: summary of 158 compounds identified as 'hits', accompanies the manuscript, Small mo... UC San Francisco.

21. iEEG, Direct Electrical Stimulation, and Assessment of Mood in Human Subjects

2018. Rao, Vikram, Sellers, Kristin, Wallace, Deanna, Lee, Morgan, Bijanzadeh, Maryam, Sani, Omid, Yang, Yuxiao, Shanechi, Maryam, Dawes, Heather, and Chang, Edward. This dataset contains iEEG neural recordings and mood measurements from adult human subjects undergoing inpatient monitoring for seizure ... UC San Francisco.

22. Industry payments to physician journal editors

2018. Wong, Victoria S. S., Avalos, Laurel N., and Callaham, Michael L. Background: Open Paymentsis a United States federal program mandating reporting of medical industry payments to physicians, increasing ... UC San Francisco.

23. Map PAINS substructures according to PAINS class and find the highest PAINS violation

2019. Davies, Julia. Many scientists are unaware that PAINS substructures are classified by hit frequency; this has led to a tendency to irresponsibly use ... UC San Francisco.

24. Measuring impostor phenomenon among health sciences librarians

2018. Barr-Walker, Jill, Bass, Michelle B., Werner, Debra A., and Kellermeyer, Liz. This dataset contains Appendices A-J corresponding to the article "Measuring impostor phenomenon among health sciences librarians". ... UC San Francisco.

25. Media coverage of nonsmoker only hiring policies

2015. Malone, Ruth E. and McDaniel, Patricia A. This SPSS dataset contains 1,159 records (from 1995-2013) representing the content of media items published in the US concerning ... UC San Francisco.

26. Mentor Assessment Instrument validation study

2016. Yukawa, Michi, Gansky, Stuart, O'Sullivan, Patricia, Feldman, Mitchell, Nishimura, Holly, and Teherani, Arianne. Prospective survey study. UC San Francisco.

27. Migori County Referral Hospital_Gestational Age Data_Nov15-April16

2018. Miller, Lara. Background: Preterm birth is the leading cause of neonatal mortality worldwide and specifically in Kenya. Preterm birth is defined by ... UC San Francisco.

28. Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

2018. Baranzini, Sergio and Cekanaviciute, Egle. Multiple sclerosis (MS) is an autoimmune disease of the central nervous system characterized by adaptive and innate immune system ... UC San Francisco.

29. NEXUS Chest CT

2015. Robert Rodriguez. UC San Francisco.

30. NEXUS Head CT

2017. Rodriguez, Robert and Mower, William. Background Clinicians, afraid of missing intracranial injuries, liberally obtain computed tomographic (CT) head imaging in blunt ... UC San Francisco.

31. NODDI-PLOS-ONE-Chang et al 2015

2015. Chang, Yishin and Mukherjee, Pratik. Diffusion tensor imaging (DTI) studies of human brain development have consistently shown widespread, but nonlinearly increasing white ... UC San Francisco.

32. Noise Modulation in Mammalian Cells

2019. Bonny, Alain and Fonseca, Joao. The noise rheostat is dope. UC San Francisco.

33. North-Central Namibia: RACD around index cases and controls 2013-2014

2017. Smith, Jennifer and Sturrock, Hugh. Data from a prospective case-control study conducted between January 2013 and August 2014 in Ohangwena and Omusati regions in north centr... UC San Francisco.

34. OpenEye PAINS Mapping Python Script

2019. Davies, Julia. OpenEye advertises an additional 170 PAINS rules (versus the original 480) to accomodate data loss when converting the substructure patte... UC San Francisco.

35. Patterns of age-related water diffusion changes in human brain by concordance and discordance analysis.

2012. Zhang, Yu, Du, An-Tao, Hayasaka, Satoru, Jahng, Geon-ho, Hlavin, Jennifer, Zhan, Wang, Weiner, Michael W., Schuff, Norbert, and Memory and Aging Center. In diffusion tensor imaging (DTI), interpreting changes in terms of fractional anisotropy (FA) and mean diffusivity or axial (D(||)) and ... UC San Francisco.

36. Pooled metagenomic sequence from human stool

2014. Greninger, Alexander and DeRisi, Joseph. This dataset corresponds to the data presented in "The complete genome of klassevirus – a novel picornavirus in pediatric stool" by ... UC San Francisco.

37. Postpartum Family Planning Preliminary DataSet

2019. Williams, Pamela. Strengthened efforts in postpartum family planning (PPFP) is a key priority to accelerate progress in reproductive, maternal, newborn, ... UC San Francisco.

38. Posttraumatic Stress Disorder (PTSD)

2012. Weiner, Michael W. and Schuff, Norbert. This data set was acquired to study various aspects associated with PTSD and includes structural neuroimaging data as well as clinical ... UC San Francisco.

39. Predicting Cognitive Decline

2012. Weiner, Michael W. These data were acquired with the overall goal of determining the regional and longitudinal pattern of changes in the brain which best ... UC San Francisco.

40. Program to Reduce Incontinence through Diet and Exercise (PRIDE)

2009. Creasman, Jennifer. Background Obesity is an established and modifiable risk factor for urinary incontinence, but conclusive evidence for a beneficial effect... UC San Francisco.

41. Progression of white matter degeneration in amyotrophic lateral sclerosis: A diffusion tensor imaging study

2012. Zhang, Yu, Schuff, Norbert, Woolley, Susan, Chiang, Gloria, Boreta, Lauren, Laxamana, Joel, Katz, Jonathon, and Weiner, Michael W. Whether longitudinal diffusion tensor MRI imaging (DTI) can capture disease progression in patients with amyotrophic lateral sclerosis ... UC San Francisco.

42. Provider counseling and provision of female condom in South Africa and Zimbabwe

2012. Harper, Cynthia, Blanchard, Kelly, Chipato, Tsungai, Nhemachena, Taazadza, Ramjee, Gita, and Blum, Maya. Objectives: Female condoms are the only female-initiated HIV and pregnancy prevention technology currently available. We examined ... UC San Francisco.

43. Re-analysis of microarray data from rapamycin resistant DLBCL cell lines

2014. Laurance, Megan. This dataset contains a re-analysis of the raw microarray data originally published by Petrich AM et al in 2012 (citation details are ... UC San Francisco.

44. Remineralization of dentin, Effect of Protease Inhibitors

2017. Habelitz, Stefan, Marshall, Grayson, and Nurrohman, Hamid. Mineralized and sound dentin matrices contain inactive preforms of proteolytic enzymes that may be activated during the demineralization ... UC San Francisco.

45. Ribosome profiling reveals a functional role for autophagy in protein translational control

2019. Goldsmith, Juliet. Autophagy promotes protein degradation, and therefore has been proposed to maintain amino acid pools to sustain protein synthesis ... UC San Francisco.

46. Score compounds using 275 frequent hitter rules published in the Lilly-Medchem-Rules

2019. Davies, Julia. Robert Bruns and Ian Watson published 275 rules to identify frequent hitters based on 18-years of experiments at Eli-Lilly. This protocol... UC San Francisco.

47. Self-managed abortion in the literature: a systematic scoping review

2019. Moseson, Heidi, Herold, Steph, Filippa, Sofia, Barr-Walker, Jill, Baum, Sarah E., and Gerdts, Caitlin. Self-managed abortion, when a person performs their own abortion without clinical supervision, is a model of abortion care used across ... UC San Francisco.

48. Sexual harassment in the library: understanding experiences and taking action

2019. Barr-Walker, Jill, Caramagno, Denise, Nevels, Iesha, Romero, Dylan, and Tahir, Peggy. Sexual harassment in libraries exists, but it has not been comprehensively studied. In the wake of the #MeToo movement and shared ... UC San Francisco.

49. Shock Index for Predicting Adverse Obstetric Hemorrhage Outcome

2016. Miller, Suellen and El Ayadi, Alison. This dataset includes clinical data for 958 women comprising pre-intervention/control participants from four studies conducted by ... UC San Francisco.

50. SIVD (Subcortical Ischemic Vascular Dementia)

2013. Weiner, Michael W. and Chui, Helena. The overall goal of this project was to determine the extent to which subcortical ischemia and infaraction, and Alzheimer's disease, ... UC San Francisco.